Towards A Better Understanding of Early Human Embryonic Development

In a new study, researchers compare the transcriptomic profiles of recently reported human embryo stage 8-cell-like cells with human embryos  

Despite being an essential developmental process, the understanding of human embryonic genome activation is limited, owing to the lack of in vitro cell models and ethical concerns. To advance understanding, five independent research groups have recently developed human 8-cell-like cells (8CLCs) from pluripotent stem cells using different approaches. In a new study, researchers now compare the transcriptomic profiles of these 8CLCs and human pre-implantation embryos to facilitate the use of 8CLCs as cell models.  

Image Title: Comparative analysis of scRNA-seq data of human 8-cell-like cells (8CLCs) and pre-implantation embryos
Image Caption: Unsupervised clustering of the 8CLCs reported by five independent research groups and human pre-implantation embryos revealed that the iBM cells reported by Yoshihara et al. were most similar to the 8-cell-stage embryos, while other 8CLCs were heterogenous.
Image Credit: The authors
Image Source Link: https://www.cell.com/stem-cell-reports/fulltext/S2213-6711(23)00238-2
License Type:  CC BY 4.0

The onset of embryo-specific gene transcription, also known as embryonic genome activation (EGA), is a crucial step in the developmental journey of an organism. Although EGA has been studied to some extent in mice, human EGA remains largely unexplored, mainly due to the lack of novel in vitro cell models and ethical restrictions on the usage of human embryos. Thus, cell models resembling the human blastomere stage—when the embryo undergoes a cell duplication process—are necessary to study the earliest stages of human EGA and understand the events that occur during early embryonic development.

To enable such studies, five independent research groups recently developed different methods to produce human 8-cell-like cells (8CLCs)—a small subpopulation of cells derived from human pluripotent stem cells (hPSCs)—closely resembling the 8-cell-stage embryo. Taubenschmid–Stowers et al. and Moya–Jódar et al. found 8CLCs from naive hPSCs under two different but specific culture conditions, while Mazid et al. optimized culture conditions to determine the existence of 8CLCs in naive hPSCs. Elsewhere, Yu et al. employed chemical screening to promote the conversion of pre-implantation epiblast-like hPSCs to 8CLCs. Yoshihara et al. reprogrammed induced blastomere-like (iBM) cells from human embryonic stem cells (hESCs) by transient expression of DUX4, a transcription factor activated just after fertilization. Although all research groups identified these cells as 8CLCs using single-cell RNA sequencing (scRNA-seq), the extent of similarities or differences among these 8CLC populations remains unknown.

In a new study, Associate Professor Masahito Yoshihara from the Institute for Advanced Academic Research and Graduate School of Medicine at Chiba University, along with Professor Juha Kere from the Department of Biosciences and Nutrition at Karolinska Institutet, Sweden, and University of Helsinki, Finland, set out to bridge this knowledge gap. They compared the transcriptomic profiles of the 8CLCs reported by the five research groups, including theirs, with each other and with 8-cell-stage blastomeres. Their findings were made available online on July 20, 2023, and published in Volume 18, Issue 8 of Stem Cell Reports journal on August 8, 2023.

For this comparison, the researchers first integrated the scRNA-seq data of the five developed 8CLCs with two datasets of human pre-implantation embryos—Petropoulos et al. and the Yan et al. datasets. The Yan et al. dataset included primed hESCs and embryos, while the Petropoulos et al. dataset included data from embryonic day three (8-cell stage) till day seven.

Statistical analysis of the successfully integrated data revealed that the iBM cells reprogrammed by Dr. Yoshihara and his team showed the highest similarity to the 8-cell-stage embryo across both datasets, while the other 8CLCs were heterogenous. These findings were reinforced by the cell type annotation of the 8CLCs using the scRNA-seq data of human pre-implantation embryos as references. 

Gene expression analysis of all 8CLCs revealed that EGA genes were highly expressed, with pluripotency gene expression being minimal in iBM cells. The other 8CLCs displayed higher expression of pluripotency genes. The researchers also found compelling evidence suggesting that the origin of 8CLCs, as well as their mode of reprogramming, might affect the final cell properties.

They anticipate that the present findings will trigger more extensive research in the early human embryonic development. As Dr. Yoshihara explains, “The developed cell models will enable us to study the earliest stages of human life without ethical concerns. In addition, reprogrammed cells overcome the constraint of limited study specimens, since they can be produced in large numbers at once.”

With further clarity on the mechanism of normal early human development, it may be possible to find new methods for understanding the causes of infertility and improving the success of in vitro fertilization.

About Associate Professor Masahito Yoshihara
Dr. Masahito Yoshihara is an Associate Professor at the Institute for Advanced Academic Research and Graduate School of Medicine at Chiba University, Japan. He is also a Visiting Researcher at the Department of Biosciences and Nutrition at Karolinska Institutet, Sweden. He is actively involved in research on the elucidation of gene expression control mechanisms in disease onset by omics analyses. His research interests include stem cell biology, regenerative medicine, and ophthalmology. He has authored over 35 publications in reputed journals with almost 1,000 citations.

Reference
Title of the original paper: Transcriptomic differences between human 8-cell-like cells reprogrammed with different methods
Authors: Masahito Yoshihara^1,2,3 and Juha Kere^1,4,5
Affiliations:

• Department of Biosciences and Nutrition, Karolinska Institutet
• Institute for Advanced Academic Research, Chiba University
• Department of Artificial Intelligence Medicine, Graduate School of Medicine, Chiba University
• Folkhälsan Research Center
• Stem Cells and Metabolism Research Program, University of Helsinki

Journal: Stem Cell Reports
DOI: 10.1016/j.stemcr.2023.06.009

Contact: Masahito Yoshihara
Institute for Advanced Academic Research/Graduate School of Medicine, Chiba University
Email: masahito.yoshihara@chiba-u.jp

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